Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4ac

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
ChIP-seq LNCaP Radiated cells
cell line
LNCaP
stress
radiated
chip antibody
anti-acetyl histone H4 antibody (Millipore, catalog# 06-598, lot# 2605373)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using HighCell ChIP kit following manufacturer's protocol (Diagenode). ChIP DNA was isolated and purified (IPure Kit, Diagenode) from samples. Next- generation sequencing library preparation using KAPA Hyper Prep kit (KAPA Biosystems) using TruSeq adapters (Integrated DNA Technologies). A quality check of the purified libraries was carried out using the Bioanalyzer 2100 (Agilent).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
63566669
Reads aligned (%)
96.6
Duplicates removed (%)
4.3
Number of peaks
15319 (qval < 1E-05)

hg19

Number of total reads
63566669
Reads aligned (%)
95.6
Duplicates removed (%)
5.3
Number of peaks
14938 (qval < 1E-05)

Base call quality data from DBCLS SRA