Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Input LNCaP Radiated cells
cell line
LNCaP
stress
radiated
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using HighCell ChIP kit following manufacturer's protocol (Diagenode). ChIP DNA was isolated and purified (IPure Kit, Diagenode) from samples. Next- generation sequencing library preparation using KAPA Hyper Prep kit (KAPA Biosystems) using TruSeq adapters (Integrated DNA Technologies). A quality check of the purified libraries was carried out using the Bioanalyzer 2100 (Agilent).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
64571490
Reads aligned (%)
96.3
Duplicates removed (%)
4.2
Number of peaks
1991 (qval < 1E-05)

hg19

Number of total reads
64571490
Reads aligned (%)
95.3
Duplicates removed (%)
5.5
Number of peaks
1410 (qval < 1E-05)

Base call quality data from DBCLS SRA