Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Chd4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
MBD3flox/- 4 days after dox induction
genotype/variation
MBD3flox/- mouse Embryonic Fibroblast Cells (MEF) transgenic for DOX inducible OSKM reprogramming
stage in reprogramming
4 days after DOX induction
chip antibody
Mi2B (ab70469, Abcam)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
7951496
Reads aligned (%)
92.7
Duplicates removed (%)
9.6
Number of peaks
262 (qval < 1E-05)

mm9

Number of total reads
7951496
Reads aligned (%)
92.4
Duplicates removed (%)
9.8
Number of peaks
260 (qval < 1E-05)

Base call quality data from DBCLS SRA