SRX3322809
GSM2828640: ChIP-seq from SK-N-SH (ENCLB423HXB); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USF2

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

sex
female
cell line
SK-N-SH
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
Metastatic neuroblastoma from bone marrow
age
4 year
donor ID
ENCDO000ABD
dev_stage
child

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22933343
Reads aligned (%)
96.4
Duplicates removed (%)
3.7
Number of peaks
2359 (qval < 1E-05)

hg19

Number of total reads
22933343
Reads aligned (%)
95.7
Duplicates removed (%)
4.8
Number of peaks
2577 (qval < 1E-05)

Base call quality data from DBCLS SRA