SRX3322766
GSM2828537: ChIP-seq from sigmoid colon (ENCLB445SQE); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Digestive tract
Cell type
Colon, Sigmoid
MeSH Description
A segment of the COLON between the RECTUM and the descending colon.

Attributes by original data submitter

Sample

sex
male
tissue
sigmoid colon
lab
Richard Myers, HAIB
sample_type
tissue
age
54 year
donor ID
ENCDO451RUA
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
86414782
Reads aligned (%)
93.1
Duplicates removed (%)
7.4
Number of peaks
7663 (qval < 1E-05)

hg19

Number of total reads
86414782
Reads aligned (%)
92.2
Duplicates removed (%)
7.9
Number of peaks
6467 (qval < 1E-05)

Base call quality data from DBCLS SRA