SRX3322718
GSM2828487: ChIP-seq from epithelial cell of prostate (ENCLB588PFU); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Prostate
Cell type
Prostate epithelial cells
NA
NA

Attributes by original data submitter

Sample

sex
male
cell type
epithelial cell of prostate
lab
Michael Snyder, Stanford
sample_type
primary cell
age
unknown
donor ID
ENCDO569WSJ
dev_stage
unknown

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
55075861
Reads aligned (%)
99.1
Duplicates removed (%)
12.6
Number of peaks
54406 (qval < 1E-05)

hg19

Number of total reads
55075861
Reads aligned (%)
98.7
Duplicates removed (%)
12.7
Number of peaks
55174 (qval < 1E-05)

Base call quality data from DBCLS SRA