Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

sex
male
cell line
C4-2B
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
prostate adenocarcinoma
age
50 year
donor ID
ENCDO000ACX
dev_stage
adult

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
30376381
Reads aligned (%)
97.3
Duplicates removed (%)
0.9
Number of peaks
1033 (qval < 1E-05)

hg19

Number of total reads
30376381
Reads aligned (%)
96.0
Duplicates removed (%)
1.1
Number of peaks
353 (qval < 1E-05)

Base call quality data from DBCLS SRA