SRX3322666
GSM2827594: ChIP-seq from C4-2B (ENCLB838PTL); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

sex
male
cell line
C4-2B
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
prostate adenocarcinoma
age
50 year
donor ID
ENCDO000ACX
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34269658
Reads aligned (%)
92.5
Duplicates removed (%)
1.0
Number of peaks
1645 (qval < 1E-05)

hg19

Number of total reads
34269658
Reads aligned (%)
90.5
Duplicates removed (%)
1.3
Number of peaks
1111 (qval < 1E-05)

Base call quality data from DBCLS SRA