SRX3322577
GSM2827505: ChIP-seq from spleen (ENCLB553FIN); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

sex
female
tissue
spleen
lab
Michael Snyder, Stanford
sample_type
tissue
age
51 year
donor ID
ENCDO271OUW
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26316762
Reads aligned (%)
97.1
Duplicates removed (%)
2.3
Number of peaks
31646 (qval < 1E-05)

hg19

Number of total reads
26316762
Reads aligned (%)
96.2
Duplicates removed (%)
2.3
Number of peaks
30936 (qval < 1E-05)

Base call quality data from DBCLS SRA