SRX3322507
GSM2827456: ChIP-seq from HEK293 (ENCLB179DKW); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF560

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sex
female
cell line
HEK293
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
unknown
age
unknown
donor ID
ENCDO000ABF
dev_stage
embryonic

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32400883
Reads aligned (%)
97.7
Duplicates removed (%)
1.0
Number of peaks
1319 (qval < 1E-05)

hg19

Number of total reads
32400883
Reads aligned (%)
97.0
Duplicates removed (%)
1.1
Number of peaks
831 (qval < 1E-05)

Base call quality data from DBCLS SRA