SRX3322482
GSM2827420: ChIP-seq from HEK293T (ENCLB264UCK); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDGF

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

dev stage
embryonic
donor ID
ENCDO000ABF
age
unknown
sex
female
lab
Michael Snyder, Stanford
health state
unknown
sample type
immortalized cell line
cell line
HEK293T

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51800426
Reads aligned (%)
97.8
Duplicates removed (%)
7.7
Number of peaks
2336 (qval < 1E-05)

hg19

Number of total reads
51800426
Reads aligned (%)
97.3
Duplicates removed (%)
7.9
Number of peaks
1768 (qval < 1E-05)

Base call quality data from DBCLS SRA