SRX3322320
GSM2827263: ChIP-seq from lower leg skin (ENCLB189CCR); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
Leg skin
NA
NA

Attributes by original data submitter

Sample

sex
female
tissue
lower leg skin
lab
Michael Snyder, Stanford
sample_type
tissue
age
53 year
donor ID
ENCDO793LXB
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34158882
Reads aligned (%)
97.8
Duplicates removed (%)
27.0
Number of peaks
1188 (qval < 1E-05)

hg19

Number of total reads
34158882
Reads aligned (%)
96.8
Duplicates removed (%)
27.5
Number of peaks
528 (qval < 1E-05)

Base call quality data from DBCLS SRA