SRX3322268
GSM2827210: ChIP-seq from A549 (ENCLB169PHV); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RCOR1

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

dev stage
adult
cell line
A549
sex
male
sample type
immortalized cell line
donor ID
ENCDO000AAZ
age
58 year
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31715350
Reads aligned (%)
98.9
Duplicates removed (%)
8.0
Number of peaks
805 (qval < 1E-05)

hg19

Number of total reads
31715350
Reads aligned (%)
98.2
Duplicates removed (%)
9.1
Number of peaks
1083 (qval < 1E-05)

Base call quality data from DBCLS SRA