SRX3322173
GSM2825958: ChIP-seq from spleen (ENCLB318RMY); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

sex
female
tissue
spleen
lab
Michael Snyder, Stanford
sample_type
tissue
age
53 year
donor ID
ENCDO793LXB
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38346852
Reads aligned (%)
97.8
Duplicates removed (%)
9.9
Number of peaks
5172 (qval < 1E-05)

hg19

Number of total reads
38346852
Reads aligned (%)
96.7
Duplicates removed (%)
10.2
Number of peaks
4400 (qval < 1E-05)

Base call quality data from DBCLS SRA