SRX3322164
GSM2825930: ChIP-seq from C4-2B (ENCLB205HAN); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

sex
male
cell line
C4-2B
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
prostate adenocarcinoma
age
50 year
donor ID
ENCDO000ACX
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27858683
Reads aligned (%)
97.6
Duplicates removed (%)
2.7
Number of peaks
37243 (qval < 1E-05)

hg19

Number of total reads
27858683
Reads aligned (%)
97.4
Duplicates removed (%)
2.7
Number of peaks
37119 (qval < 1E-05)

Base call quality data from DBCLS SRA