SRX3321981
GSM2825470: ChIP-seq from Panc1 (ENCLB819OUB); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
PANC-1
Tissue
Pancreas/Duct
Disease
Epithelioid Carcinoma

Attributes by original data submitter

Sample

sex
male
cell line
Panc1
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
pancreatic carcinoma
age
56 year
donor ID
ENCDO000ABB
dev_stage
unknown

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
118339647
Reads aligned (%)
91.2
Duplicates removed (%)
3.7
Number of peaks
29530 (qval < 1E-05)

hg19

Number of total reads
118339647
Reads aligned (%)
89.3
Duplicates removed (%)
4.1
Number of peaks
29635 (qval < 1E-05)

Base call quality data from DBCLS SRA