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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Prostate epithelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3321976
GSM2825461: ChIP-seq from epithelial cell of prostate (ENCLB056QHH); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Prostate
Cell type
Prostate epithelial cells
NA
NA
Attributes by original data submitter
Sample
sex
male
cell type
epithelial cell of prostate
lab
Michael Snyder, Stanford
sample_type
primary cell
age
unknown
donor ID
ENCDO569WSJ
dev_stage
unknown
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39594017
Reads aligned (%)
98.6
Duplicates removed (%)
1.6
Number of peaks
1066 (qval < 1E-05)
hg19
Number of total reads
39594017
Reads aligned (%)
97.3
Duplicates removed (%)
1.6
Number of peaks
406 (qval < 1E-05)
Base call quality data from
DBCLS SRA