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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Pregnant uterus
ATCC
MeSH
RIKEN BRC
SRX3306734
GSM2826089: E7-myo-2-input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Uterus
Cell type
Pregnant uterus
NA
NA
Attributes by original data submitter
Sample
source_name
pregnant uterus, myometrium
strain
B6CBAF1/J
tissue/cell
whole myometrium from implantation sites
embryonic day
E7.5
ChIP
input
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone-DNA complexes were immuoprecipitated from sonicated nuclei. Libraries were prepared using the Illumina TruSeq system and PCR amplification.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
39888185
Reads aligned (%)
97.9
Duplicates removed (%)
12.5
Number of peaks
457 (qval < 1E-05)
mm9
Number of total reads
39888185
Reads aligned (%)
97.7
Duplicates removed (%)
12.5
Number of peaks
533 (qval < 1E-05)
Base call quality data from
DBCLS SRA