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For hg38
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BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: hESC H9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3302802
GSM2825175: H3K27me3 ChIP from SSEA5-positive hESC, biological replicate 2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA
Attributes by original data submitter
Sample
source_name
undifferentiated hESC
chip antibody
anti-H3K27me3 (C15410069; LotNr: A1821D; Diagenode)
cell line
H9
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using NEBNext® ChIP-Seq Library Prep kit for Illumina (New England Biolabs, #E6200) according to manufacturer's instructions
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
43325024
Reads aligned (%)
81.5
Duplicates removed (%)
17.6
Number of peaks
1468 (qval < 1E-05)
hg19
Number of total reads
43325024
Reads aligned (%)
80.8
Duplicates removed (%)
19.6
Number of peaks
1423 (qval < 1E-05)
Base call quality data from
DBCLS SRA