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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GATA3
wikigenes
PDBj
CellType: hESC derived trophoblast cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3292068
GSM2817659: GATA3 ChIP, biological replicate 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GATA3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived trophoblast cells
NA
NA
Attributes by original data submitter
Sample
source_name
trophoblast progenitors at day 3_GATA3 ChIP
cell line
H9
source cell type
Human embryonic stem cells (hESC)
treated with
BMP4 for 3 day
cell type
trophoblast progenitors at day 3
chip antibody
anti-GATA3 (#CM405A, Biocare Medical)
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17160806
Reads aligned (%)
92.7
Duplicates removed (%)
7.2
Number of peaks
36643 (qval < 1E-05)
hg19
Number of total reads
17160806
Reads aligned (%)
92.3
Duplicates removed (%)
8.0
Number of peaks
36588 (qval < 1E-05)
Base call quality data from
DBCLS SRA