SRX3291968
GSM2817561: ASC-old-5; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Adipocyte
Cell type
Adipose-Derived Mesenchymal Stem Cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary cells
cell type
Adipose derived stem cells
passages
<7
tissue
Adipose

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
protocol described in Curr Protoc Mol Biol. 2015; 109: 21.29.1–21.29.9. protocol described in Curr Protoc Mol Biol. 2015; 109: 21.29.1–21.29.9.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23549876
Reads aligned (%)
97.6
Duplicates removed (%)
26.7
Number of peaks
29433 (qval < 1E-05)

hg19

Number of total reads
23549876
Reads aligned (%)
97.4
Duplicates removed (%)
26.8
Number of peaks
29365 (qval < 1E-05)

Base call quality data from DBCLS SRA