Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell type
mouse embryonic stem cells
antibody
K4me1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA from cells were extracted by Trizol (invitrogen, 15596018), then precipitated by isopropanol; genomic DNA were extrated by phenol chloroform extraction and precipitated by ethanol. Libraries of genomic DNA were construted by using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB #7370L); Libraries of polyA RNA were constructed by using NEBNext poly(A) RNAseq library preparation kits (EE6100L).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
21603579
Reads aligned (%)
97.1
Duplicates removed (%)
13.7
Number of peaks
978 (qval < 1E-05)

mm9

Number of total reads
21603579
Reads aligned (%)
97.1
Duplicates removed (%)
13.6
Number of peaks
949 (qval < 1E-05)

Base call quality data from DBCLS SRA