SRX3279805
Sox2 ChIP-seq of E11.5 mouse lung

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic lung
NA
NA

Attributes by original data submitter

Sample

strain
CD1
isolate
E11.5 Lung Sox2 ChIP-seq 1
dev_stage
E11.5
sex
not collected
tissue
Lung

Sequenced DNA Library

library_name
Sox2ChIP_Lung_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42152267
Reads aligned (%)
80.8
Duplicates removed (%)
54.1
Number of peaks
603 (qval < 1E-05)

mm9

Number of total reads
42152267
Reads aligned (%)
80.6
Duplicates removed (%)
54.2
Number of peaks
622 (qval < 1E-05)

Base call quality data from DBCLS SRA