Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cbfa2t3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
Embryoid Bodies
MeSH Description
Spontaneous aggregations of human embryonic stem cells that occur in vitro after culturing in a medium that lacks LEUKEMIC INHIBITORY FACTOR. The embryoid bodies can further differentiate into cells that represent different lineages.

Attributes by original data submitter

Sample

source_name
FLK1+mesoderm
cell type
ES cell-derived embryoid bodies
strain
C57Bl/6 X Sv129
ebs stage
day 4
antibody
ETO2 (sc-9741x,santa cruz)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
120537317
Reads aligned (%)
92.6
Duplicates removed (%)
13.1
Number of peaks
999 (qval < 1E-05)

mm9

Number of total reads
120537317
Reads aligned (%)
92.4
Duplicates removed (%)
14.0
Number of peaks
1004 (qval < 1E-05)

Base call quality data from DBCLS SRA