Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived pancreatic cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pooled samples from PP1, PP2 and PP2 with LSD1 inhibition
cell type
differentiated hESCs
developmental stage
Early and late pancreatic progenitor cells (pooled)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Total RNA was extracted by RNARNeasy Mini Kit Libraries were prepared using the TruSeq® Stranded mRNA Library Prep Kit (RNA-seq) and the KAPA DNA Library Preparation Kits for Illumina® KAPA Kit (ChIP-seq)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
34465886
Reads aligned (%)
91.4
Duplicates removed (%)
5.3
Number of peaks
1586 (qval < 1E-05)

hg19

Number of total reads
34465886
Reads aligned (%)
90.4
Duplicates removed (%)
6.6
Number of peaks
1203 (qval < 1E-05)

Base call quality data from DBCLS SRA