Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NUP98

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC HUES6
NA
NA

Attributes by original data submitter

Sample

source_name
HUES6, Nup98 ChIP
cell line
HUES6
cell type
embryonic stem (ES) cells
chip antibody
Nup98 (Cell Signaling #2292 )

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
26065791
Reads aligned (%)
82.2
Duplicates removed (%)
13.9
Number of peaks
1128 (qval < 1E-05)

hg38

Number of total reads
26065791
Reads aligned (%)
84.0
Duplicates removed (%)
12.7
Number of peaks
986 (qval < 1E-05)

Base call quality data from DBCLS SRA