Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
OCI-AML3
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
JQ1-input
cell line
NPMc+ leukemia OCI-AML3 cells
cell type
acute myeloid leukemia
treatment
JQ1, 500 nM for 24 h
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was performed as described previously (Lee TI, Johnstone SE, Young RA. Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat Protoc. 2006;1(2):729-748) ChIP-seq libraries were prepared according to the Illumina protocol for ChIP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
108066184
Reads aligned (%)
97.5
Duplicates removed (%)
7.0
Number of peaks
2434 (qval < 1E-05)

hg19

Number of total reads
108066184
Reads aligned (%)
96.6
Duplicates removed (%)
8.6
Number of peaks
1727 (qval < 1E-05)

Base call quality data from DBCLS SRA