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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H2A.Z
wikigenes
PDBj
CellType: Heart
ATCC
MeSH
RIKEN BRC
SRX3257466
GSM2806123: H2Az ChIP-Seq Sham; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H2A.Z
Cell type
Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.
Attributes by original data submitter
Sample
source_name
whole heart
pathology
Normal heart
agent
12wk old
treatment
Sham
strain
C57BL/6
antibody
anti-H2A.Z (ActiveMotif 39113)
Sex
male
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP, Library construction and Illumina sequencing performed by Active Motif
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
36855144
Reads aligned (%)
93.7
Duplicates removed (%)
5.7
Number of peaks
22757 (qval < 1E-05)
mm9
Number of total reads
36855144
Reads aligned (%)
93.7
Duplicates removed (%)
5.8
Number of peaks
22753 (qval < 1E-05)
Base call quality data from
DBCLS SRA