Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Others
Cell type
Detroit 562
Primary Tissue
Nasal Pharynx
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
pharyngeal epithelial cells
cell line
Detroit 562 cells
treatment
None
duplicates
replicate 1
antibody
anti-H3K27ac antibody (Active motif, reference 39138)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
76842473
Reads aligned (%)
99.5
Duplicates removed (%)
29.9
Number of peaks
76148 (qval < 1E-05)

hg19

Number of total reads
76842473
Reads aligned (%)
99.5
Duplicates removed (%)
30.0
Number of peaks
76076 (qval < 1E-05)

Base call quality data from DBCLS SRA