Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

Liver

genotype/variation

wild-type

strain

C57BL/6

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChiP-seq was performed as described (Bonhoure et al., 2014) Libraries were prepared with 12 ng of ChIP DNA (ChIP-seq) or genomic DNA (INPUT) according to manufacturer's's instruction with the ChIP-seq DNA Sample prep kit” (Illumina, 1003473)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

190063525

Reads aligned (%)

83.4

Duplicates removed (%)

43.7

Number of peaks

2190 (qval < 1E-05)

mm9

Number of total reads

190063525

Reads aligned (%)

83.3

Duplicates removed (%)

43.7

Number of peaks

2151 (qval < 1E-05)