SRX323578
GSM1187242: MEF H3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
embryonic fibroblasts
cell type
embryonic fibroblasts
strain
C57BL/6
antibody
Histone mark H3 (ab1791-100)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The isolated DNA was RNase treated and purified using Qiagen columns. For sequencing libraries we followed Illumina’s protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
72883125
Reads aligned (%)
98.5
Duplicates removed (%)
9.6
Number of peaks
620 (qval < 1E-05)

mm9

Number of total reads
72883125
Reads aligned (%)
98.2
Duplicates removed (%)
9.6
Number of peaks
690 (qval < 1E-05)

Base call quality data from DBCLS SRA