Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Neural
Cell type
Cortex
NA
NA

Attributes by original data submitter

Sample

source_name
Neurons
strain
C57BL/6
tissue
Cortex
cell type
Neurons
age
postnatal day 1
genotype
WT
treatment
Control
chip antibody
anti-H3K27me3 antibody (MBL, MABI0323)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells grown on 10-cm dishes were fixed with 1% formaldehyde-containing medium for 10 min and were quenched by glycine. Collected samples were then subjected to ChIP assay using anti-H3K4me1 (MBL, MABI0302), anti-H3K4me3 (MBL, MABI0304), anti-H3K27me3 (MBL, MABI0323), anti-H3K27ac (MBL, MABI0309S) antibodies. Sequencing libraries were made using the NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
33805847
Reads aligned (%)
99.0
Duplicates removed (%)
6.7
Number of peaks
344 (qval < 1E-05)

mm9

Number of total reads
33805847
Reads aligned (%)
98.8
Duplicates removed (%)
6.7
Number of peaks
295 (qval < 1E-05)

Base call quality data from DBCLS SRA