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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Skeletal muscle
ATCC
MeSH
RIKEN BRC
SRX3218470
H3K4me1 ChIPSeq data from WT and Setd7KO cultured skeletal muscle stem cells.
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA
Attributes by original data submitter
Sample
isolate
Input Biological Replicate 3
age
15 weeks
dev_stage
Adult
sex
female
tissue
Skeletal Muscle (Hindlimb)
cell_type
Skeletal Muscle Stem Cells
genotype
MyoDiCRE/Setd7FL/FL
growth_protocol
Expanded in vitro for 7 days
Sequenced DNA Library
library_name
Setd7null_3_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NA
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
56488503
Reads aligned (%)
97.8
Duplicates removed (%)
7.3
Number of peaks
228 (qval < 1E-05)
mm9
Number of total reads
56488503
Reads aligned (%)
97.7
Duplicates removed (%)
7.7
Number of peaks
239 (qval < 1E-05)
Base call quality data from
DBCLS SRA