SRX3218405
H3K4me1 ChIPSeq data from WT and Setd7KO cultured skeletal muscle stem cells.

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA

Attributes by original data submitter

Sample

isolate
Input Biological Replicate 2
age
15 weeks
dev_stage
Adult
sex
female
tissue
Skeletal Muscle (Hindlimb)
cell_type
Skeletal Muscle Stem Cells
genotype
MyoDiCRE/Setd7FL/FL
growth_protocol
Expanded in vitro for 7 days

Sequenced DNA Library

library_name
Setd7null_2_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NA

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
65817573
Reads aligned (%)
98.3
Duplicates removed (%)
7.9
Number of peaks
256 (qval < 1E-05)

mm9

Number of total reads
65817573
Reads aligned (%)
98.2
Duplicates removed (%)
8.3
Number of peaks
270 (qval < 1E-05)

Base call quality data from DBCLS SRA