ChIP-Atlas: SRX3217566

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Histone
Antigen: H3K27ac

Cell type

Cell type Class: Muscle
Cell type: Tibialis anterior muscle
NA: NA

Attributes by original data submitter

Sample

source_name: tibialis anterior muscle
tissue: tibialis anterior muscle
timepoint: 14 days
chip antibody: H3 K27ac (Active Motif 39133)
treatment: control

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Frozen tissue thawed, homogenized, cells lysed Chromatin sheared and incubated overnight at 4C with antibodies using constant agitation; co-immunoprecipitated

Sequencing Platform

instrument_model: Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 16733351
Reads aligned (%): 97.7
Duplicates removed (%): 80.2
Number of peaks: 124 (qval < 1E-05)

mm9

Number of total reads: 16733351
Reads aligned (%): 97.5
Duplicates removed (%): 80.4
Number of peaks: 152 (qval < 1E-05)

Base call quality data from DBCLS SRA