Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Liver
Cell type
Mitochondria of liver
NA
NA

Attributes by original data submitter

Sample

source_name
bisulfite-treated mtDNA (and lambda DNA)
strain
C57BL/6J
tissue
mitocondoria purified from brain
treatment
bisulfite-treated for 40 min

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Mitochondrial nucleic acid containing mitochondrial DNA (mtDNA) was prepared from the purified mitochondria by protease K treatment, phenol extraction, chloroform/isoamyl-alcohol extraction and ethanol precipitation, followed by linearization of mtDNA by restriction enzyme digestion. The mtDNA and spike-in lambda DNA were treated with 9.2M bisulfite, and used for PBAT library preparation as a template.

Sequencing Platform

instrument_model
Illumina MiSeq

mm10

Number of total reads
406125
Reads aligned (%)
96.2
Coverage rate (×)
0.0
Number of hyper MRs
5 (qval < 1E-05)

mm9

Number of total reads
406125
Reads aligned (%)
96.2
Coverage rate (×)
0.0
Number of hyper MRs
5 (qval < 1E-05)

Base call quality data from DBCLS SRA