Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Spleen
cell type
CD8T
strain
C57BL/6

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Lymphocytes were harvested as described in manuscript. Fresh cells were prepared as previously described (Buenrostro et al., 2013). Library was constructed using standard Illumina protocols and TruSeq SBS Kit v3 (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
55970306
Reads aligned (%)
96.0
Duplicates removed (%)
35.1
Number of peaks
39486 (qval < 1E-05)

mm9

Number of total reads
55970306
Reads aligned (%)
95.9
Duplicates removed (%)
35.3
Number of peaks
39492 (qval < 1E-05)

Base call quality data from DBCLS SRA