SRX3176047
GSM2779246: Suz12rescue Suz12 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Suz12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
129B6F1
chip antibody
Suz12 (Cell Signaling, Rabbit mAb, D39F6)
genotype
SUZ12 rescue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra II protocol (NEB, E7645S)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
48445685
Reads aligned (%)
95.2
Duplicates removed (%)
19.9
Number of peaks
328 (qval < 1E-05)

mm9

Number of total reads
48445685
Reads aligned (%)
95.0
Duplicates removed (%)
19.9
Number of peaks
363 (qval < 1E-05)

Base call quality data from DBCLS SRA