SRX3176035
GSM2779234: E14 16h washout H3K27me1 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
129/Ola
chip antibody
H3K27me1 (Takara, mouse mAb, MABI0321)
genotype
WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra II protocol (NEB, E7645S)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23810157
Reads aligned (%)
97.1
Duplicates removed (%)
14.3
Number of peaks
276 (qval < 1E-05)

mm9

Number of total reads
23810157
Reads aligned (%)
96.9
Duplicates removed (%)
14.3
Number of peaks
267 (qval < 1E-05)

Base call quality data from DBCLS SRA