SRX3176013
GSM2779212: Suz12VEFS H3K27me1 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
129B6F1
chip antibody
H3K27me1 (Takara, mouse mAb, MABI0321)
genotype
SUZ12-VEFS rescue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra II protocol (NEB, E7645S)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
44351172
Reads aligned (%)
95.3
Duplicates removed (%)
32.3
Number of peaks
337 (qval < 1E-05)

mm9

Number of total reads
44351172
Reads aligned (%)
94.9
Duplicates removed (%)
32.2
Number of peaks
414 (qval < 1E-05)

Base call quality data from DBCLS SRA