Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6
chip antibody
H3K27me1 (Takara, mouse mAb, MABI0321)
genotype
EZH2 rescue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra protocol (NEB, E7370S)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
31292489
Reads aligned (%)
78.7
Duplicates removed (%)
43.7
Number of peaks
2403 (qval < 1E-05)

mm9

Number of total reads
31292489
Reads aligned (%)
78.0
Duplicates removed (%)
43.5
Number of peaks
2431 (qval < 1E-05)

Base call quality data from DBCLS SRA