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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Skeletal muscle
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3171414
ChIP-seq Input in Homo sapiens: adult CN3 MB
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA
Attributes by original data submitter
Sample
isolate
Quadriceps muscle biopses
age
43
biomaterial_provider
Fields Center for FSHD of the Rochester Medical Center Dept. of Neurology, New York, USA
sex
male
tissue
Skeletal Muscle
dev_stage
Adult
disease
Healthy donor
sample_type
Input of CN sample 3 proliferating myoblasts
treatment
Cycling cells cultured in in F10 Nutrient Mixture 20 % fetal bovine serum, 2 mM L-glutamine, 10 ng/ml hFGF, 0.4 mg/ml dexamethasone
Sequenced DNA Library
library_name
CN3 MB_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
20058364
Reads aligned (%)
97.3
Duplicates removed (%)
2.8
Number of peaks
872 (qval < 1E-05)
hg19
Number of total reads
20058364
Reads aligned (%)
96.5
Duplicates removed (%)
2.9
Number of peaks
407 (qval < 1E-05)
Base call quality data from
DBCLS SRA