SRX3171396
ChIP-seq of H3K27me3 in Homo sapiens: adult FSHD3 MT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA

Attributes by original data submitter

Sample

isolate
Quadriceps muscle biopses
age
45
biomaterial_provider
Fields Center for FSHD of the Rochester Medical Center Dept. of Neurology, New York, USA
sex
female
tissue
Skeletal Muscle
dev_stage
Adult
disease
Facioscapulohumeral Dystrophy
sample_type
H3K27me3 of FSHD sample 3 differentiated myotubes
treatment
Differentiating cells cultured in DMEM 2 % horse serum, 10 _g/ml human insulin, 4.5 g/L D-Glucose and 0.11 g/L sodium pyruvate

Sequenced DNA Library

library_name
FSHD3 MT_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16800664
Reads aligned (%)
95.3
Duplicates removed (%)
4.2
Number of peaks
366 (qval < 1E-05)

hg19

Number of total reads
16800664
Reads aligned (%)
94.9
Duplicates removed (%)
4.2
Number of peaks
211 (qval < 1E-05)

Base call quality data from DBCLS SRA