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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Skeletal muscle
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3171395
ChIP-seq of H3K27me3 in Homo sapiens: adult CN4 MT
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA
Attributes by original data submitter
Sample
isolate
Quadriceps muscle biopses
age
42
biomaterial_provider
Fields Center for FSHD of the Rochester Medical Center Dept. of Neurology, New York, USA
sex
female
tissue
Skeletal Muscle
dev_stage
Adult
disease
Healthy donor
sample_type
H3K27me3 of CN sample 4 differentiated myotubes
treatment
Differentiating cells cultured in DMEM 2 % horse serum, 10 _g/ml human insulin, 4.5 g/L D-Glucose and 0.11 g/L sodium pyruvate
Sequenced DNA Library
library_name
CN4 MT_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
26861679
Reads aligned (%)
96.4
Duplicates removed (%)
4.2
Number of peaks
307 (qval < 1E-05)
hg19
Number of total reads
26861679
Reads aligned (%)
96.0
Duplicates removed (%)
4.3
Number of peaks
300 (qval < 1E-05)
Base call quality data from
DBCLS SRA