Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
antiH3K9me3_non_dysgenic
genotype
F1 non-dysgenic progeny: (females) Harwich vs. (males) w[1118]
developmental stage
Adult
tissue
Ovary
chip antibody
anti-H3K9me3 (Abcam, catalog# ab8898, lot# GR271507-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
IP and input libraries were prepared using NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® ChIP on formaldehyde-crosslinked ovaries was performed as previously described (Rozhkiv et al, 2013 - Genes Dev), using 100-200 dissected adult ovaries as starting material and the anti-H3K9me3 (Abcam, ab8898).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
37136316
Reads aligned (%)
54.6
Duplicates removed (%)
33.3
Number of peaks
7853 (qval < 1E-05)

dm3

Number of total reads
37136316
Reads aligned (%)
55.2
Duplicates removed (%)
24.2
Number of peaks
14340 (qval < 1E-05)

Base call quality data from DBCLS SRA