Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Neural

Cell type

Retina

MeSH Description

The ten-layered nervous tissue membrane of the eye. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent.

Sample

source_name

retina

strain

C57BL/6

tissue

retina

genotype/variation

wild type

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Retinal chromatin DNA was extracted using a rabbit anti-BMAL1 antibody Rubicon Genomics ThruPlex® DNA kit

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

11960630

Reads aligned (%)

96.8

Duplicates removed (%)

22.1

Number of peaks

383 (qval < 1E-05)

mm9

Number of total reads

11960630

Reads aligned (%)

96.5

Duplicates removed (%)

22.2

Number of peaks

405 (qval < 1E-05)