SRX3155907
GSM2770714: ChIP-seq THP-1-NTC-H3K9IP-1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Blood
cell line
THP-1
cell type
AML Cell Line
chip antibody
H3K9me3 ThermoFisher 49-1008

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from Mnase treated chromatin and histone-DNA complexes were isolated with antibody. Standard illumina library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21913505
Reads aligned (%)
98.2
Duplicates removed (%)
7.4
Number of peaks
545 (qval < 1E-05)

hg19

Number of total reads
21913505
Reads aligned (%)
96.9
Duplicates removed (%)
10.0
Number of peaks
485 (qval < 1E-05)

Base call quality data from DBCLS SRA