Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
CG3893-KD_PolII ChIP-seq
cell type
Ovarian Somatic Cells (OSC)
transfected with
siRNA against CG3893
chip antibody
anti-Pol II antibody 8WG16
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking chomatin was sheared to 200bp using a Covaris S2 ultrasonicators, immunoprecipitated using anti-Pol II antibody 8WG16 (Santa Cruz). After reversing the cross-linking, samples were treated with RNase A and then DNA was recovered.  The deep sequencing libraries were prepared according to NEBNext Ultra DNA Library Prep Kit for Illumina (NEB)

Sequencing Platform

instrument_model
Illumina MiSeq

dm6

Number of total reads
4607828
Reads aligned (%)
91.3
Duplicates removed (%)
29.5
Number of peaks
5447 (qval < 1E-05)

dm3

Number of total reads
4607828
Reads aligned (%)
91.5
Duplicates removed (%)
28.5
Number of peaks
5592 (qval < 1E-05)

Base call quality data from DBCLS SRA