SRX3145000
ChIP-seq of MIN6 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pancreas
Cell type
MIN6B1
NA
NA

Attributes by original data submitter

Sample

strain
mouse insulinoma cell line (MIN6)
isolate
not applicable
breed
C57BL/6
cultivar
not applicable
ecotype
not applicable
age
not applicable
dev_stage
not applicable
sex
not applicable
tissue
Transformed cell line
biomaterial_provider
K Yamamura
replicate
MIN6 ChIP K4me3 biological replicate 2 technical replicate 2

Sequenced DNA Library

library_name
MIN6_ChIP_exp2_K4me3_replicate_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30879559
Reads aligned (%)
89.5
Duplicates removed (%)
49.2
Number of peaks
27060 (qval < 1E-05)

mm9

Number of total reads
30879559
Reads aligned (%)
89.4
Duplicates removed (%)
49.2
Number of peaks
27119 (qval < 1E-05)

Base call quality data from DBCLS SRA