Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Plasmablasts
NA
NA

Attributes by original data submitter

Sample

source_name
Plasmablasts
Sex
female
sorting markers
Thy1.1- F4/80- CD11c- CD138+ CD45.1- CD45.2+
organ
spleen
stimulation
LPS
ezh2 status
knockout

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Three days post-LPS naïve B cell (nB, B220+GL7-CD138-) and plasmablast (Pb, CD138+) populations were isolated by FACS from the spleens of chimeric mice. 2000-4000 cells were centrifuged for 10 minutes at 500xg, resuspended in 50 ul of Lysis Buffer (contents), and immediately centrifuged for 30 minutes at 500xg. Tagmentation was performed by resuspending cells in 25 ul of Tagmentation mix (1x TD Buffer, 2.5 ul Tn5 Transpoase) and incubating for 60 minutes at 37°C. DNA was purified and amplified into a sequencing library with KAPA HiFi Polymerase and the Nextera Indexing Kit Primers (Illumina, Inc).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
21873296
Reads aligned (%)
97.4
Duplicates removed (%)
30.0
Number of peaks
24448 (qval < 1E-05)

mm9

Number of total reads
21873296
Reads aligned (%)
97.3
Duplicates removed (%)
30.2
Number of peaks
24420 (qval < 1E-05)

Base call quality data from DBCLS SRA